PDBNucleicAcids

• PDBNucleicAcids package
  • Submodules
  • PDBNucleicAcids.BasePairRules module
    • BasePairRules
      • BasePairRules.angle_between_bases()
      • BasePairRules.atom_from_central_hbond()
      • BasePairRules.atoms_from_base_ring()
      • BasePairRules.distance()
      • BasePairRules.is_candidate()
      • BasePairRules.is_complementary()
      • BasePairRules.is_different_residue()
      • BasePairRules.is_from_different_chain()
      • BasePairRules.is_valid_angle()
      • BasePairRules.is_valid_distance()
      • BasePairRules.is_valid_stagger()
      • BasePairRules.stagger()
    • WatsonCrickBasePairRules
      • WatsonCrickBasePairRules.atoms_from_base_ring()
    • dsDNAWatsonCrickBasePairRules
  • PDBNucleicAcids.Geometry module
    • angle_between_planes()
    • angle_between_vectors()
    • calculate_normal_vector()
    • plane_separation()
  • PDBNucleicAcids.NucleicAcid module
    • BasePair
      • BasePair.check_validity()
      • BasePair.get_atoms()
      • BasePair.get_i_res()
      • BasePair.get_j_res()
      • BasePair.get_stagger()
    • DSNABuilder
      • DSNABuilder.build_double_strands()
    • DoubleStrandNucleicAcid
      • DoubleStrandNucleicAcid.as_dataframe()
      • DoubleStrandNucleicAcid.get_atoms()
      • DoubleStrandNucleicAcid.get_i_strand()
      • DoubleStrandNucleicAcid.get_j_strand()
      • DoubleStrandNucleicAcid.get_na_complex_type()
      • DoubleStrandNucleicAcid.get_stagger_values()
    • NABuilder
    • NucleicAcid
      • NucleicAcid.get_atoms()
      • NucleicAcid.get_chain_id()
      • NucleicAcid.get_na_type()
      • NucleicAcid.get_seq()
    • search_paired_base()
  • Module contents