PDBNucleicAcids

• PDBNucleicAcids package
  • Submodules
  • PDBNucleicAcids.BasePairRules module
    • dsDNAWatsonCrickBasePairRules
      • dsDNAWatsonCrickBasePairRules.angle_between_bases()
      • dsDNAWatsonCrickBasePairRules.atom_from_central_hbond()
      • dsDNAWatsonCrickBasePairRules.atoms_from_base_ring()
      • dsDNAWatsonCrickBasePairRules.distance()
      • dsDNAWatsonCrickBasePairRules.is_candidate()
      • dsDNAWatsonCrickBasePairRules.is_complementary()
      • dsDNAWatsonCrickBasePairRules.is_different_residue()
      • dsDNAWatsonCrickBasePairRules.is_from_different_chain()
      • dsDNAWatsonCrickBasePairRules.is_valid_angle()
      • dsDNAWatsonCrickBasePairRules.is_valid_distance()
      • dsDNAWatsonCrickBasePairRules.is_valid_stagger()
      • dsDNAWatsonCrickBasePairRules.stagger()
  • PDBNucleicAcids.Geometry module
    • angle_between_planes()
    • angle_between_vectors()
    • calculate_normal_vector()
    • plane_separation()
  • PDBNucleicAcids.MMCIF2DataFrame module
    • basepair_dataframe_from_mmcif()
    • polymer_dataframe_from_mmcif()
  • PDBNucleicAcids.NucleicAcid module
    • BasePair
      • BasePair.check_validity()
      • BasePair.get_atoms()
      • BasePair.get_stagger()
    • DSNABuilder
      • DSNABuilder.build_double_strands()
    • DoubleStrandNucleicAcid
      • DoubleStrandNucleicAcid.get_atoms()
      • DoubleStrandNucleicAcid.get_dataframe()
      • DoubleStrandNucleicAcid.get_i_strand()
      • DoubleStrandNucleicAcid.get_j_strand()
      • DoubleStrandNucleicAcid.get_nucleic_acid_complex_type()
      • DoubleStrandNucleicAcid.get_stagger_values()
    • NABuilder
    • NucleicAcid
      • NucleicAcid.get_atoms()
      • NucleicAcid.get_chain_id()
      • NucleicAcid.get_nucleic_acid_type()
      • NucleicAcid.get_sequence()
    • search_paired_base()
  • PDBNucleicAcids.utils module
    • get_paired_segments()
  • Module contents